Here's (part of) your list:
Nadal 2008-2014
Novak 2015-2016
Nadal 2017-2019
2009 and 2012 - Rafa sucked/was out with injury for half the year, so obviously he wouldn't be world no. 1 those years.
2011: Clay: Rafa is ahead 3,5 % in return points won, Novak is 2,5 % ahead in serve points won:
(2011 stats here, Djokovic outperforming Rafa on 2nd serve serve points:
https://www.atptour.com/en/stats/2nd-serve-points-won/2011/clay/all/, while Rafa is ahead in the return department. Difference is small enough to make for close matches though
https://www.atptour.com/en/stats/2nd-serve-return-points-won/2011/clay/all/)
HC: Novak 3,5 % ahead in RoS:
https://www.atptour.com/en/stats/2nd-serve-return-points-won/2011/hard/all/, while being less than 2,5 % shy of Rafa on 2nd serve points won
https://www.atptour.com/en/stats/2nd-serve-points-won/2011/hard/all/
Grass: Neck & neck
I.e. pretty darn close overall. Grass could go both ways, while Rafa has a very small edge on clay and Novak has a similar small edge on HC.
So let's look closer.
GS tournaments (i.e. where most points are earned) from QF onwards:
Rafa: 50,9 % & 57,4 %
Djokovic: 52,1 % 57,1 % (i.e. edge Djokovic - source Ultimate tennis stats)
Let's look even closer though. Novak against no. 1 in 2011 (i.e. their first 6 matches, Djokovic became no. 1 after Wimbledon).
Result?
Novak was outright killing him on this metric: 57,4 % behind his own 2nd serve and 55,2 % against Rafa's.
At the US, Rafa was 42,2 behind his own 2nd serve and 55,8 % against Novak's. I.e. Novak would most likely have won the vast majority of their 7 matches (maybe all). And he would have been no. 1.
Side note: He would have beaten Federer in the FO semi and (if we rely solely on the numbers from their 2 clay clashes in 2011) also have beaten Rafa in the final (Novak won 61 % vs. the Rafa 2nd serve in Madrid (Rafa won 48 %) and a whopping 75 % in Rome (Rafa won 53 %).
In short, giving Rafa 11 YE no. 1's under your system is, sorry to say, just wrong.