I had some knee trouble which was not helped by my Babolat shoes. I bought a pair of Babolat Propulse 3 shoes and these were part of my knee problem. By using orthotics wiht them the problem slowly went away. They had less sole cushioning and that was probably part of the issue although these things are always hard to be certain about.
On the other hand I have had no problems at all since switching to Babolat SFX which have more cushioning and thicker soles. Seems to have been more bout the specifics of the shoe than the brand.