More lead is needed at 3/9 than 12 for the same SW change. That means that the balance point is different since there are different amounts of lead involved. However, the 3/9 setup maximizes the TW increase. Mikeler measured the SW increases and I think he came up with ~3 SW units/gram at 12 and ~1.8 SW units/gram at 3/9. If I were to customize a frame, I would target TW and SW, doing the TW 1st. That means mod at 3/9, then mod at 12. Or once you know your frames specs, play around with the TWU calculator and see what it says about different amounts of lead at variable points.