The 2003 TMC was the only one out of those you listed that I was considering on the same plane of pure unbelievable shotmaking as fed's 2006 tmc final performance. 2003 wimby semi v roddick was also great, but aside from that huge forehand half-volley winner he hit on set point (one of the great shots of the open era, I reckon) there wasn't anything that impressed me half as much as a bunch of federer's shots in that final against blake.
the 2003 final against scud and 2005 ao semi against safin are two matches that I would rank a fair bit lower than the others. I know you consider the 2005 ao semi to be the best match ever, but do you really think it was one of federer's best shotmaking performances individually? or just that he was part of one of the best mutual shotmaking displays of all time? Because whilst federer's performance in that match was above average (well above average if you look at his whole career, but only "above average" IMO if you look at how well he normally played in 2005), I can't think of many breathtaking attacking strokes (although he certainly played alot of very good attacking strokes) that he played during that match compared to say the 2003 tmc, or 2004 tmc semi (first set) or 2006 tmc, for example. I mean, look at the highlights of his match against blake (highlights are sufficient if you're evaluating pure shotmaking rather than overall level of play), then look at the highlights vs safin. Every winner federer hits on the 2006 tmc highlight reel leaves me gobsmacked, can you honestly say the same for the 2005 ao semi?
What a joke, how is Federer supposed to hit a gobsmacking winner when Safin is giving him nothing but 90+ mph groundstrokes that are painting corners and lines.